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研究業績

2024

原著論文

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  • Kumazawa M and *Ifuku K,(2024) Unraveling the Evolutionary Trajectory of LHCI in Red-Lineage Algae: Conservation, Diversification, and Neolocalization.iScience 27 (10): 110897​

  • Takeuchi K, Ochiai K, Kobayashi M, Kuroda K, *Ifuku K. (2024) Light-chilling stress causes hyper-accumulation of iron in shoot, exacerbating leaf oxidative damage in cucumber. Plant Cell Physiol. pcae111.

  • Maekawa S, Ohnishi M, Wada S, Ifuku K, Miyake C. (2024) Enhanced Reduction of Ferredoxin in PGR5-Deficient Mutant of Arabidopsis thaliana Stimulated Ferredoxin-Dependent Cyclic Electron Flow around Photosystem I. Int J Mol Sci. 25(5):2677. 

  • Kato K#, Nakajima Y#, Xing J#, Kumazawa M, Ogawa H, Shen JR, *Ifuku K, Nagao R, (2024) Structural basis for molecular assembly of fucoxanthin chlorophyll a/c-binding proteins in a diatom photosystem I supercomplex. eLife 13:RP99858 (# Contributed equally)　

  • Kato K#, Hamaguchi T#, Kumazawa M#, Nakajima Y, Ifuku K, Hirooka S, Hirose Y, Miyagishima SY, Suzuki T, Kawakami K, Dohmae N, Yonekura K, Shen JR, Nagao R.(2024) The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proc Natl Acad Sci U S A. 121(11):e2319658121. (# Contributed equally)　

  • Tachibana R, Abe S, Marugami M, Yamagami A, Akema R, Ohashi T, Nishida K, Nosaki S, Miyakawa T, Tanokura M, Kim JM, Seki M, Inaba T, Matsui M, Ifuku K, Kushiro T, Asami T, Nakano T.(2024) BPG4 regulates chloroplast development and homeostasis by suppressing GLK transcription factors and involving light and brassinosteroid signaling. Nat Commun. 15(1):370.

著書・解説記事

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  • 落合久美子（2024）馬建鋒・信濃卓郎・高野順平 編「植物栄養学 第3版」（分担執筆）第5章 植物の必須微量元素　8. 塩素　文永堂出版　ISBN 978-4-8300-4145-7 📚
     
  • 小林優（2024）馬建鋒・信濃卓郎・高野順平 編「植物栄養学 第3版」（分担執筆）第4章 植物の必須多量元素　5. カルシウム　文永堂出版　ISBN 978-4-8300-4145-7 📚
     
  • 小林優（2024）福島和彦 他編「木質の形成 第3版  バイオマス科学への招待」（分担執筆）3.7 ペクチンの生合成およびその細胞壁中での分布と存在状態，海青社　ISBN: 4860993748 📚
     
  • Umezawa T, Umemura K, Kobayashi M, Miyamoto T, Takada R, Takeda-Kimura Y, Yamamura M (2024) “Sustainable production and utilization of grass viomass in deteriorated grasslands in Indonesia”, In: The Climate-Energy-Land Nexus in Indonesia: Biofuel, REDD+ and Biochar, Mori A & Halimatussadiah Eds, Routledge, Abington, UK, pp 133-142, ISBN 978-1003325154

     

2023

原著論文

  • Takamatsu K, Toyofuku M, Okutani F, Yamazaki S, Nakayasu M, Aoki Y, Kobayashi M, Ifuku K, Yazaki K, Sugiyama A. (2023) α-Tomatine gradient across artificial roots recreates the recruitment of tomato root-associated Sphingobium. Plant Direct. 18;7(12):e550

  • An S, Yamashita M, Iguchi S, Kihara T, Kamon E, Ishikawa K, Kobayashi M, Ishimizu T. (2023) Biochemical Characterization of Parsley Glycosyltransferases Involved in the Biosynthesis of a Flavonoid Glycoside, Apiin. Int J Mol Sci. 24(23):17118. 

  • Okada K, Morimoto Y, Shiraishi Y, Tamura T, Mayama S, Kadono T, Adachi M, Ifuku K, Nemoto M. (2023) Nuclear Transformation of the Marine Pennate Diatom Nitzschia sp. Strain NIES-4635 by Multi-Pulse Electroporation. Mar Biotechnol (NY).  doi: 10.1007/s10126-023-10273-w

  • Putri DALP, Widyastuti R, Idris I, Ikhwani AZNI, Nugroho S, Sudiana IM, Kanti A, Purnaningsih I, Ochiai K, Kobayashi M, Wijaya L (2023) Unraveling the mechanisms of drought tolerance enhancement in Sorghum bicolor through Glomus mosseae inoculation: Insights from comparative analysis of Super 2 and Konawe Selatan accessions. South African Journal of Botany 161 293-304

  • Yamashita M, Fujimori T, An S, Iguchi S, Takenaka Y, Kajiura H, Yoshizawa T, Matsumura H, Kobayashi M, Ono E, Ishimizu T (2023) The apiosyltransferase celery UGT94AX1 catalyzes the biosynthesis of the flavone glycoside apiin. Plant Physiol. 193(3):1758-1771.

  • Ohnishi M, Maekawa S, Wada S,  Ifuku K,  Miyake C (2023) Evaluating the Oxidation Rate of Reduced Ferredoxin in Arabidopsis thaliana Independent of Photosynthetic Linear Electron Flow: Plausible Activity of Ferredoxin-Dependent Cyclic Electron Flow around Photosystem I. Int. J. Mol. Sci. 24(15) 12145

  • Yoshizawa S, Azuma T, Kojima K, Inomura K, Hasegawa M, Nishimura Y, Kikuchi M, Armin G, Tsukamoto Y, Miyashita H, Ifuku K, Takashi Y,  Marchetti A, Fukuzawa H, Sudo Y, Kamikawa R (2023) Light-driven Proton Pumps as a Potential Regulator for Carbon Fixation in Marine Diatoms. Microbes and Environments. 38(2) Article ID: ME23015

  • Takahashi Y, Noguchi K, Ifuku K,  Sohtome T, Nishimoto T, Wada S, Sato T, Takegahara-Tamakawa Y, Miyake C, Makino A, Suzuki Y (2023) Effects of drought stress on the oxidation of the reaction center chlorophyll of photosystem I and grain yield in paddy-field grown rice plants. Soil Science and Plant Nutrition . https://doi.org/10.1080/00380768.2023.2214579

  • Ochiai K, Nomura Y, Uesugi A, Matoh T,(2023) Biuret toxicity induces accumulation of nitrogen-rich compounds in rice plants. Plant and Soil 485(1-2) 615-628

著書・解説記事

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  • Ifuku K (2023) Diversity of the PSI–PSII megacomplexes that conduct energy spillover in green plants, Plant and Cell Physiology,
     
  • 小林優（2023）米山忠克・長谷川功・関本均 編「新植物栄養・肥料学」（分担執筆）4章 多量元素の獲得と機能　5. カルシウム，朝倉書店　ISBN 978-4-254-43131-5 pcad06

2022

原著論文

  • Furutani R, Wada S, Ifuku K, Maekawa S, Miyake C (2022) Higher Reduced State of Fe/S-signals, with the Suppressed Oxidation of P700, Causes PSI Inactivation in Arabidopsis thaliana, Antioxidants, in press.

  • Imaizumi K, Nishimura T, Nagao R, Saito K, Nakano T, Ishikita H, Noguchi T, Ifuku K (2022) D139N mutation of PsbP enhances the oxygen-evolving activity of photosystem II through stabilized binding of a chloride ion. PNAS Nexus. 1: pgac136

  • Takeuchi K, Che Y, Nakano T, Miyake C, Ifuku K (2022) The ability of P700 oxidation in photosystem I reflects chilling stress tolerance in cucumber. J. Plant Res. 135: 681–692

  • Inoue H, Tajima K, Mitsumori C, Inoue-Kashino N, Miura T, Ifuku K, Hirota H, Kashino Y, Fujita K, Kinoshita H (2022) Biodiversity risk assessment of genetically modified Chaetoceros gracilis for outdoor cultivation, The Journal of General and Applied Microbiology, doi: 10.2323/jgam.2021.11.001.

  • Rivai R, Miyamoto T, Awano T, Yoshinaga A, Chen SY, Sugiyama J, Tobimatsu Y, Umezawa T, Kobayashi M (2022) Limiting silicon supply alters lignin content and structures of sorghum seedling cell walls. Plant Sci. doi.org/10.1016/j.plantsci.2022.111325

  • Kimura A, Kitoh-Nishioka H, Aota T, Hamaguchi T, Yonekura K, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Ifuku K, Yamashita E, Kashino Y, Itoh S (2022) Theoretical Model of the Far-Red-Light-Adapted Photosystem I Reaction Center of Cyanobacterium Acaryochloris marina Using Chlorophyll d and the Effect of Chlorophyll Exchange. J Phys Chem B. doi:10.1021/acs.jpcb.2c00869.

  • Ochiai K, Oba K, Oda K, Miyamoto T, Matoh T (2022) Effects of improved sodium uptake ability on grain yields of rice plants under low potassium supply. Plant Direct. 6: e387

  • Nagao R, Kato K, Kumazawa M, Ifuku K, Yokono M, Suzuki T, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR (2022) Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex. Nat. Commun. 13: 1764

  • Kumazawa M, Nishide H, Nagao R, Inoue-Kashino N, Shen JR, Nakano T, Uchiyama I, Kashino Y, Ifuku K (2022) Molecular phylogeny of fucoxanthin-chlorophyll a/c proteins from Chaetoceros gracilis and Lhcq/Lhcf diversity. Physiol. Plant, e13598

  • Sakamoto S, Yoshikawa T, Teraishi M, Yoshinaga N, Ochiai K, Kobayashi M, Schmelz EA, Okumoto Y, Mori N (2022) A non-proteinogenic amino acid, β-tyrosine, accumulates in young rice leaves via long-distance phloem transport from mature leaves. Biosci Biotechnol Biochem. 86: 427–434

 

総説

  • Imaizumi K, Ifuku K (2022) Binding and functions of the two chloride ions in the oxygen-evolving center of photosystem II, Photosynth Res. 153: 135–156

 

著書・解説記事等

  • 熊沢 穣、西出浩代、長尾 遼、井上（菓子野）名津子、沈 建仁、中野雄司、内山郁夫、菓子野康浩、伊福健太郎 (2022) 珪藻の集光性色素タンパク質の分子系統と多様性、光合成研究 32(1): 18–24

2021

原著論文

  • Rivai RR, Miyamoto T, Awano T, Takada R, Tobimatsu Y, Umezawa T, Kobayashi M (2021) Nitrogen deficiency results in changes to cell wall composition of sorghum seedlings. Sci. Rep. 11: 23309

  • Shimakawa G, Shoguchi E, Burlacot A, Ifuku K, Che Y, Kumazawa M, Tanaka K, Nakanishi S (2021) Coral symbionts evolved a functional polycistronic flavodiiron gene. Photosynth. Res. 151: 113-124

  • Bolortuya B, Kawabata S, Yamagami A, Davaapurev BO, Takahashi F, Inoue K, Kanatani A, Mochida K, Kumazawa M, Ifuku K, Jigjidsuren S, Battogtokh T, Udval G, Shinozaki K, Asami T, Batkhuu J, Nakano T (2021) Transcriptome Analysis of Chloris virgata, Which Shows the Fastest Germination and Growth in the Major Mongolian Grassland Plant. Front. Plant Sci. 12: 684987

  • Ohnishi M, Furutani R, Sohtome T, Suzuki T, Wada S, Tanaka S, Ifuku K, Ueno D, Miyake C (2021) Photosynthetic Parameters Show Specific Responses to Essential Mineral Deficiencies. Antioxidants (Basel) 10: 996

  • Hamaguchi T, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Itoh S, Ifuku K, Yamashita E, Maeda K, Yonekura K, Kashino Y (2021) Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nat. Commun. 12: 2333

  • Nagao R, Yokono M, Ueno Y, Suzuki T, Kumazawa M, Kato KH, Tsuboshita N, Dohmae N, Ifuku K, Shen JR, Akimoto S (2021) Enhancement of excitation-energy quenching in fucoxanthin chlorophyll a/c-binding proteins isolated from a diatom Phaeodactylum tricornutum upon excess-light illumination. Biochim. Biophys. Acta Bioenerg. 1862: 148350.

  • Hiraide H, Tobimatsu Y, Yoshinaga A, Lam PY, Kobayashi M, Matsushita Y, Fukushima K, Takabe K (2021) Localised laccase activity modulates distribution of lignin polymers in gymnosperm compression wood. New Phytologist, 230: 2186-2199.

  • Rivai RR, Takada R, Miyamoto T, Hanano S, Shibata D, Ohdoi K, Kobayashi M (2021) Examination of the usability of leaf chlorophyll content and gene expression analyses as nitrogen status biomarkers in Sorghum bicolor. Journal of Plant Nutrition 44: 773-790

  • Yamazaki S, Mardani-Korrani H, Kaida R, Ochiai K, Kobayashi M, Nagano AJ, Fujii Y, Sugiyama A, Aoki Y (2021) Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere. Sci. Rep. 11: 88

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  • 著書・解説記事等

  • Ifuku K & Nagao R (2021) “Evolution and Function of the Extrinsic Subunits of Photosystem II”, In: “Photosynthesis: Molecular Approaches to Solar Energy Conversion” Advances in Photosynthesis and Respiration 47 (eds: J-R. Shen, K. Satoh, S. I., & Allakhverdiev), Springer Nature, Switzerland AG, pp. 429–446.

  • 伊福 健太郎 (2021) 日本光合成学会編「光合成」, 5. 光化学系II (分担執筆）、朝倉書店 ISBN：978-4-254-17176-1.

  • 小林 優（2021）植物のミネラル輸送研究最前線 6. 植物におけるカルシウムの吸収と輸送　日本土壌肥料学雑誌 92(2): 114-120

2003 ~ 2020, 伊福着任以前の当研究室の成果

~ 2020, 伊福の前所属での成果

京都大学　教育活動データベース

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原著論文

 

  • Sakurai N, Mardani-Korrani H, Nakayasu M, Matsuda K, Ochiai K, Kobayashi M, Tahara Y, Onodera T, Aoki Y, Motobayashi T, Komatsuzaki M, Ihara M, Shibata D, Fujii Y, Sugiyama A (2020) Metabolome analysis identified okaramines in the soybean rhizosphere as a legacy of hairy vetch. Frontiers in Genetics 11: 114

  • Ochiai K, Uesugi A, Masuda Y, Nishii M, Matoh T (2020) Overexpression of exogenous biuret hydrolase in rice plants confers tolerance to biuret toxicity. Plant Direct 4:1–12.

  • Yamazaki S, Ochiai K, Matoh T (2019) Rice plants have three homologs of glutathione synthetase genes, one of which, OsGS2, codes for hydroxymethyl-glutathione synthetase. Plant direct, 3: 1-10

  • Kitajima S, Aoki W, Shibata D, Nakajima D, Sakurai N, Yazaki K, Munakata R, Taira T, Kobayashi M, Aburaya S, Eric Hyrmeya Savadogo EH, Hibino S, Yano H (2018) Comparative multi-omics analysis reveals diverse latex-based defense strategies against pests among latex-producing organs of the fig tree (Ficus carica). Planta 247: 1423–1438

  • Zhou Y, Kobayashi M, Awano T, Matoh T, Takabe K (2018) A new monoclonal antibody against rhamnogalacturonan II and its application to immunocytochemical detection of rhamnogalacturonan II in Arabidopsis roots. Bioscience, Biotechnology, and Biochemistry 82: 1780–1789

  • Yamazaki S, Ueda Y, Mukai A, Ochiai K, Matoh T (2018) Rice phytochelatin synthases OsPCS1 and OsPCS2 make different contributions to cadmium and arsenic tolerance. Plant Direct 2: 1-15.

  • Kobayashi M, Miyamoto M, Matoh T, Kitajima S, Hanano S, Sumerta IN, Narise T, Suzuki H, Sakurai N, Shibata D (2017) Mechanism underlying rapid responses to boron deprivation in Arabidopsis roots. Soil Science and Plant Nutrition 64: 106–115

  • Zhou Y, Awano T, Kobayashi M, Matoh T, Takabe K (2017) Immunocytochemical detection of rhamnogalacturonan II on forming cell plates in cultured tobacco cells. Bioscience, Biotechnology, and Biochemistry 81: 899-905.

  • 松原圭佑, 間藤 徹 (2017) メタン発酵消化液の窒素肥効を稲わら同時施用によって維持する試み 日本土壌肥料学雑誌 88:441–446.

  • 松原圭佑，落合久美子，間藤徹（2016）水稲栽培の基肥としてのメタン発酵消化液の適正な施用方法の検討　日本土壌肥料学雑誌 87: 110-119.

  • Miyamoto T, Ochiai K, Nonoue Y, Matsubara K, Yano M, Matoh T. (2015) Expression level of the sodium transporter gene OsHKT2;1 determines sodium accumulation of rice cultivars under potassium-deficient conditions. Soil Science and Plant Nutrition 61: 481-492.

  • Oiwa Y, Kitayama K, Kobayashi M, Matoh T (2013) Boron deprivation immediately causes cell death in growing roots of Arabidopsis thaliana. Soil Science and Plant Nutrition 59: 621-627.

  • Tsuyama T, Kawai R, Shitan N, Matoh T, Sugiyama J, Yoshinaga A, Takabe K, Fujita M, Yazaki K (2013) Proton-dependent conifer in transport, a common major transport event in differentiating xylem tissue of woody plants. Plant Physiology 162: 918-926.

  • Koshiba T, Kobayashi M, Matsuoka K, Fujiwara T, Matoh T (2013) Boron nutrition of cultured tobacco BY-2 cells. VII. Rapid induction of metabolic dysfunction in cells deprived of boron as revealed by microarray analysis. Soil Science and Plant Nutrition 59: 189-194.

  • Miyamoto T, Ochiai K, Takeshita S, Matoh T (2012) Identification of quantitative trait loci associated with shoot sodium accumulation under low potassium conditions in rice plants. Soil Science and Plant Nutrition 58: 728-736.

  • Sriprachote A, Kanyawongha P, Pantuwan G, Ochiai K, Matoh T (2012) Evaluation of Thai rice cultivars with low–grain cadmium. Soil Science and Plant Nutrition 58: 568-572.

  • Sriprachote A, Kanyawongha P, Ochiai K, Matoh T. (2012) Current situation of cadmium–polluted paddy soil, rice and soybean in the Mae Sot District, Tak Province, Thailand. Soil Science and Plant Nutrition 58: 349-359.

  • Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. (2011) Suppression of a NAC–like transcription factor gene improves boron–toxicity tolerance in rice.  Plant Physiology 156: 1457-1463.

  • Kobayashi, M., Kouzu, N., Inami, A., Toyooka, K., Konishi, Y., Matsuoka, K., and Matoh, T. (2011). Characterization of Arabidopsis CTP:3-deoxy-D-manno-2-octulosonate cytidylyltransferase (CMP-KDO synthetase), the enzyme that activates KDO during rhamnogalacturonan II biosynthesis. Plant & Cell Physiology 52: 1832–1843.

  • Koshiba T, Kobayashi M, Ishihara A, Matoh T. (2010) Boron nutrition of cultured tobacco BY-2 cells. VI. Calcium is involved in early responses to boron deprivation. Plant & Cell Physiology 51: 323-327.

  • Fujiwara T, Matoh T (2009) Plant nutrition–Roots of life for fundamental biology and better crop production. Plant & Cell Physiology 50: 2-4.

  • Koshiba T, Kobayashi M, Matoh T. (2009) Boron nutrition of tobacco BY-2 cells. V. Oxidative damage is the major cause of cell death induced by boron deprivation. Plant & Cell Physiology 50: 26-36.

  • Ochiai K, Uemura S, Shimizu A, Okumoto Y, Matoh T. (2008) Boron toxicity in rice (Oryza sativa L.). I. Quantitative Trait Locus (QTL) analysis of tolerance to boron toxicity. Theoretical and Applied Genetics 117: 125-133.

  • 松田晃, 山崎恭子, 間藤徹 (2007) 化学分析と小ポット栽培試験による家畜排泄物堆肥の窒素肥効の評価 日本土壌肥料学雑誌 78: 479-485.

  • 松田晃, 渡辺亮, 落合久美子, 間藤徹 (2006) 京都市近郊で市販されている堆肥・有機質資材の二酸化炭素発生速度に基づく品質評価の試み 日本土壌肥料学雑誌 77: 387-393.

  • Kohorn BD, Kobayashi M, Johansen S, Riese J, Huang LF Koch K, Fu S, Dotson A, Byers N. (2006) An Arabidopsis cell wall-associated kinase required for invertase activity and cell growth. The Plant Journal 46: 307-316.

  • Kohorn BD, Kobayashi M, Johansen S, Friedman HP, Fischer A, Byers N. (2006) Wall-associated kinase 1 (WAK1) is crosslinked in endomembranes, and transport to the cell surface requires correct cell-wall synthesis. Journal of Cell Science 119: 2282-2290.

  • Matoh T, Ochiai K. (2005) Distribution and partitioning of newly taken-up boron in sunflower. Plant and Soil 278: 351-360.

  • Kobayashi M, Mutoh T, Matoh T. (2004) Boron nutrition of cultured tobacco BY-2 cells. IV. Genes induced under low boron supply. Journal of Experimental Botany 55: 1441-1443.

  • 松田晃, 大野佳織, 長久保有之, 間藤徹 (2007) 食品工業汚泥堆肥に含まれる窒素の形態による利用率の違い -重窒素標識堆肥とイタリアンライグラスを用いた検討- 日本土壌肥料学雑誌 78: 317-321.

  • Matsuura K, Miyagawa I, Kobayashi M, Ohta D, Matoh T (2003) Arabidopsis 3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase: cDNA cloning and expression analyses. Journal of Experimental Botany 54: 1785-1787.

総説・解説

  • Koshiba T, Kobayashi M, Matoh T. (2009) Boron deficiency: How does the defect in cell wall damage the cells? Plant Signaling & Behavior 4: 557-558.

  • 落合久美子 (2007) 作物のホウ素過剰害耐性のメカニズム 化学と生物 45: 449-450.

  • 間藤徹 (2007) メタン発酵消化液の肥料化への取り組み 環境技術 36: 633-638.

  • 間藤徹 (2007) 堆肥vs化学肥料 化学と生物 45: 426-429.

  • 小林優 (2005) 細胞壁結合型キナーゼと液胞型インベルターゼ:植物の細胞外マトリックス-原形質相互作用の解明への糸口か? 化学と生物 43: 704-706.

  • Kobayashi M, Matoh T. (2004)Boron Nutrition of cultured tobacco BY-2 cells. In Biotechnology in Agriculture and Forestry, Vol 53: Tobacco BY-2 cells. Nagata T, Hasezawa S and Inze D Eds, Springer-Verlag Berlin Heidelberg, pp 250-264

  • 松田晃, 間藤徹 (2003) 窒素サイクルと食料生産 -植物栄養学21世紀の課題- 化学と生物 41: 644-650.


著書

  • 間藤徹・馬建鋒・藤原徹 編 (2010) 植物栄養学 第2版 文永堂出版

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